!include once #1027304 // Eclipse Collections

import org.eclipse.collections.impl.map.mutable.primitive.*;

import org.eclipse.collections.api.tuple.primitive.*;

set flag NoModCount. // save some space. Make sure that this flag doesn't screw other collections/map you compile with this.

final sclass LineComp_PairIndex {

  bool verbose;

  bool inOrder = true;

  //MultiSetMap<IntPair, Node> nodes;

  new LongObjectHashMap<LinkedHashSet<Node>> nodes; // key: pair, value: set of nodes in order

  MultiSetMap<Int, IntPair> byCount // values are pairs

    = null; // init later

    //= multiSetMap_innerHashSet_outerRevTreeMap(); // makes a difference in selecting a pair if there are multiple with the same count

    // = multiSetMap_innerCompactHashSet_outerRevTreeMap(); // same but more compact

    //= multiSetMap_innerTreeSet_outerRevTreeMap(); // initial version that kind of pointlessly sorts the same-count nodes lexicographically

  new LinkedHashMap<S, Ch> chains;

  Ch firstChain;

  int totalPairCount;

  int initialNodesSetCapacity = 1;

  L<IVF1<Node>> onAddingPair, onRemovingPair;

  LongIntHashMap existingPairsIndex;

  // This queue checks all newly made pairs to see if they already

  // have a symbol.

  new LinkedList<Node> compressionQueue;

  Comparator<IntPair> pairComparatorForBalancing;

  void init {

    /*nodes = inOrder

      ? multiSetMap_innerLinkedHashSet_outerHashMap()

      : multiSetMap_innerHashSet_outerHashMap();*/

  }

  // indicate end of chain-making phase.

  // we still accept more chains after this though, I think (for late input)

  void haveChains {

    if (byCount == null) {

      //time "Making byCount" {

        if (pairComparatorForBalancing != null)

          byCount = multiSetMap_innerCustomTreeSet_outerRevTreeMap(pairComparatorForBalancing);

        else

          byCount = multiSetMap_innerCompactHashSet_outerRevTreeMap();

        for (Set<Node> set : nodes.values()) {

          IntPair p = first(set).pair();

          int n = set.size();

          if (verbose) print("Adding node " + p + " (" + n + ")");

          byCount.put(n, p);

        }

      //}

      ifdef LineComp_PairIndex_printSize

        print("byCount size: " + n2(guessObjectSizeWithout(ll(this, pairComparatorForBalancing), byCount)) + " for " + nNodes(nodes.size()));

      endifdef

    }

  }

  // a "chain" of nodes (one input file)

  sclass Ch {

    Node tail;

    *(LineComp_PairIndex pi, L<Int> l) {

      int count = 0;

      fOr (int i : l) {

        add(pi, i);

        if (((++count) % oneMillion()) == 0)

          print("Added " + n2(count) + " entries to chain");

      }

    }

    L<Int> toList() {

      new L<Int> l;

      Node node = tail;

      while (node != null) {

        l.add(node.value);

        node = node.prev;

      }

      ret reverseInPlace(l);

    }

    void add(LineComp_PairIndex pi, int i) {

      new Node n;

      ifndef LineComp_SingleChain

        n.ch = this;

      endifndef

      n.value = i;

      n.prev = tail;

      if (tail != null) tail.next = n;

      tail = n;

      pi.addToIndex(n.prev);

      pi.processQueue();

    }

  }

  sclass Node {

    ifndef LineComp_SingleChain

      Ch ch;

    endifndef

    int value;

    Node prev, next;

    int a() { ret value; }

    int b() { ret next == null ? -1 : next.value; }

    IntPair pair() { ret next == null ? null : IntPair(a(), b()); }

    toString {

      ret stringIf(prev != null, "<") + value +

        (next == null ? "" : next.value

         + stringIf(next.next != null, ">")); 

    }

  }

  IntPair nodeToPair(Node n) {

    ret n?.pair();

  }

  // add node to pair index

  void addToIndex(Node n) {

    IntPair p = nodeToPair(n);

    if (p == null) ret;

    callFAll(onAddingPair, n);

    int count = nodes_getSize(p);

    nodes_add(p, n);

    if (byCount != null) { // not in init phase

      if (count != 0) byCount.remove(count, p);

      byCount.put(count+1, p);

    }

    if (existingPairsIndex != null)

      compressionQueue.add(n);

  }

  // remove node from pair index

  void removeFromIndex(Node n) {

    IntPair p = nodeToPair(n);

    if (p == null) ret;

    callFAll(onRemovingPair, n);

    int count = nodes_getSize(p);

    if (count == 0) fail("Can't remove pair " + p);

    nodes_remove(p, n);

    byCount.remove(count, p);

    if (--count > 0) byCount.put(count, p);

  }

  // return all pairs in "most popular" bucket

  Cl<IntPair> mostPopularDuplicates() {

    Int key = firstKey(byCount);

    ret toInt(key) < 2 ? null : byCount.get(key);

  }

  IntPair mostPopularDuplicate() {

    ret toInt(firstKey(byCount)) < 2 ? null : firstValue(byCount);

  }

  IntPair mostPopularPair() {

    ret firstValue(byCount);

  }

  int highestBucketNr() {

    ret or0(firstKey(byCount));

  }

  // counts buckets actually (lower value than totalPairCount)

  int numberOfDuplicates() {

    ret byCount.size()-l(byCount.get(1));

  }

  int getCount(IntPair p) {

    ret nodes_getSize(p);

  }

  void replacePair(int pa, int pb, int replaceWith) {

    IntPair p = IntPair(pa, pb);

    Set<Node> set = nodes.get(intPairToLong(p));

    if (set != null)

      for (Node n : cloneList(set)) {

        continue if n.a() != pa || n.b() != pb; // nodes might have been deleted or changed

        replacePair(n, replaceWith);

      }

  }

  void replacePair(Node node, int replaceWith) {

    removeFromIndex(node.prev);

    removeFromIndex(node);

    removeFromIndex(node.next);

    node.value = replaceWith;

    deleteNode(node.next);

    addToIndex(node.prev);

    addToIndex(node);

    processQueue();

  }

  void processQueue {

    if (existingPairsIndex != null) {

      Node n;

      while not null (n = popFirst(compressionQueue))

        checkIfPairExists(n);

    }

  }

  void checkIfPairExists(Node node) {

    if (existingPairsIndex == null) ret;

    if (node.value < 0) ret;

    IntPair pair = nodeToPair(node);

    if (pair == null) ret;

    //print("Checking pair " + pair);

    int i = existingPairsIndex.getIfAbsent(intPairToLong(pair), -1);

    if (i >= 0) {

      //print("  Replacing with: " + i);

      replacePair(node, i);

    }

  }

  void deleteNode(Node node) {

    if (node.next != null) node.next.prev = node.prev; else getChain(node).tail = node.prev;

    if (node.prev != null) node.prev.next = node.next;

    node.value = -1; // mark invalid

  }

  Ch newChain(S version, L<Int> encoding) {

    Ch ch = new(this, encoding);

    chains.put(version, ch);

    ifdef LineComp_SingleChain

      assertNull(firstChain);

    endifdef

    if (firstChain == null) firstChain = ch;

    ret ch;

  }

  int nodes_getSize(IntPair p) {

    ret l(nodes.get(intPairToLong(p)));

  }

  void nodes_add(IntPair p, Node n) {

    ++totalPairCount;

    long l = intPairToLong(p);

    LinkedHashSet<Node> set = nodes.get(l);

    if (set == null)

      nodes.put(l, set = new LinkedHashSet(initialNodesSetCapacity);

    set.add(n);

  }

  void nodes_remove(IntPair p, Node n) {

    --totalPairCount;

    long l = intPairToLong(p);

    LinkedHashSet<Node> set = nodes.get(l);

    if (set == null || !set.remove(n)) fail("Consistency error");

    if (set.isEmpty())

      nodes.remove(l);

  }

  // also shrinks sets...

  void printStats {

    print("Different pairs: " + l(nodes));

    print("Different counts: " + byCount.keysSize() + " (highest count: " + firstKey(byCount) + ")");

    long count = 0, waste = 0, newWaste = 0;

    long count1 = 0, waste1 = 0;

    for (HashSet set : nodes.values()) {

      count1 += set.size();

      int capacity = hashSetCapacity(set);

      waste1 += capacity-set.size();

      //if (capacity > set.size()*3) set.shrink(); // TODO

    }

    if (pairComparatorForBalancing == null) for (CompactHashSet set : (Cl<CompactHashSet>) (Cl) values(byCount.data)) {

      count += set.size();

      waste += set.capacity()-set.size();

      set.shrinkToFactor(0.5);

      newWaste += set.capacity()-set.size();

    }

    print("Nodes set count: " + count1 + ". Waste: " + waste1);

    //print("Set count: " + count + ". Waste: " + waste + (waste == newWaste ? "" : " => " + newWaste));

    print("Duplicates: " + n2(totalPairCount-byCount.count(1)));

  }

  Ch getChain(Node node) {

    ifdef LineComp_SingleChain

      ret firstChain;

    endifdef

    ifndef LineComp_SingleChain

      ret node.ch;

    endifndef

  }

  /*public LineComp_PairIndex clone() {

  }*/

}