sclass RuleEngine2_MatchedRule { RuleEngine2.Rule rule; SS map; new Map mappingQuality; // key in map to -1, 0 or 1 int qualitySum() { ret intSum(values(mappingQuality))-l(map); } } static L ai_ruleEngine2_rulesForInput_3(RuleEngine2 engine, S q) { LS tokI = javaTokNPunctuationWithBrackets(q); new L l; for (RuleEngine2.Rule rule : engine.rules) { S cond = first(rule.in); SS map = zipTwoListsToCIMap_strict_withoutEquals(javaTokNPunctuationWithBrackets(cond), tokI); if (map == null) continue; //print(map + " | " + cond + " | " + rule.vars); new RuleEngine2_MatchedRule matched; matched.rule = rule; matched.map = map; Map qualities = ai_ruleEngine2_mappingQualities(rule); for (S a, b : map) { mapPut(matched.mappingQuality, a, qualities.get(pair(a, b))); } l.add(matched); } ret l; }